Matches in Nanopublications for { ?s ?p ?o <https://w3id.org/np/RA9L_hdCf10srYElISiCOl2zijNtDPUZqHSt95DehrXYA/assertion>. }
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- 0f397732-2228-4504-9cb1-0f9f03d47ba9 name "participate in epigenetic process" assertion.
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- 51b512bf-8fc2-4a97-a435-f4ef88e8738e name "chromatin data interpretation" assertion.
- 5203443e-917c-48ab-9672-9f19bd88a2c9 name "HD gene deregulation" assertion.
- 53ad8ded-4634-4987-8bc7-ab85d2b44f25 name "deregulate in HD" assertion.
- 53e59ec3-dfb7-469b-9402-59f575627fb6 name "earth sciences" assertion.
- 56f63414-b70a-4287-aaf6-23cf267863e1 name "epigenetic role" assertion.
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- 7b07ba7d-89d3-44d0-9f72-ebb4e782420e name "chromatin" assertion.
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- 7c72b069-3a59-4e80-aec4-23b16d8ef742 name "chromatin data interpretation." assertion.
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- c9f14c98-fada-4dae-8893-687080be03df name "chromatin analysis" assertion.
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- deb2db68-3551-4492-ab33-48182fbd3657 name "anni web services" assertion.
- e4d9c757-2b8e-4f4f-9eaa-597e05f3c561 name "HD" assertion.
- e9aa1507-5d12-454e-93d7-64647c03aecd name "Genes deregulated in HD, are participating in epigenetic processes" assertion.
- f155092b-3e65-4b13-b058-dcd22b5eaa87 name "Genoa" assertion.
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- f90033c2-8c63-44c3-926a-af18526d1f1b name "<p>This research object, was created in order to further analyse and interpret the results from the research object http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/ (HD chromatin analysis). The workflows in this research object are using the anni web services, implemented by the Biosemantics group.</p>" assertion.
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- f97e8e56-b0de-4fda-9e37-352412aa2d3c name "conclusions.txt" assertion.
- ro-crate-metadata.json conformsTo 1.1 assertion.
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- f84d00ef-47b2-40b3-af26-099ed7e82f5b description "<p>This research object, was created in order to further analyse and interpret the results from the research object http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/ (HD chromatin analysis). The workflows in this research object are using the anni web services, implemented by the Biosemantics group.</p>" assertion.
- 2ea2f7b6-1c15-454f-b62a-e7656bb81db4 description "This workflow lists all IDs and descriptions of the predefined concept set" assertion.
- 473e57ab-4056-427a-a8d9-b2c62e9b34d4 description "This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group). This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery." assertion.
- 7f5b48a1-083d-4891-b311-b4627ceaa7ab description "This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. "5" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The workflow is using the anni web services" assertion.
- 840546e9-eecd-455e-b3f7-b1893b29e083 description "This workflow can prioritize genes that are related to a specific concept, e.g. HTT. In order to obtain the concept id of the term that is going to be matched against the gene list, the workflow Get concept suggestions from term, needs to run first. matchConceptProfileList: the gene list we want to match (order) against a particular concept queryConceptProfileList: the concept (or gene list) we want to match the query against" assertion.
- cb796e52-689f-4e9e-8842-09612588af02 description "Sketch of the workflows and their explanation, for data interpretation, plus the connection to the output from the RO for chromatin analysis" assertion.
- ccd9b022-3e2d-422b-a5c5-1e12af73b5c7 description "This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example "human", "htt", "Transcription" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows" assertion.
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