Matches in Nanopublications for { ?s <http://schema.org/description> ?o ?g. }
- web-interface description "User-friendly web-based interface providing interactive access to sRNA-target gene regulatory networks through visualization, tabular data exploration, and direct article highlighting" assertion.
- python description "Python is a high-level, interpreted programming language known for its readability and extensive library ecosystem, used as the primary backend language for InteractOA" assertion.
- flask description "Flask is a micro web framework written in Python, used to build the HTTP server and routing infrastructure for InteractOA backend" assertion.
- d3js description "Data-Driven Documents (D3.js) is a JavaScript visualization library used to create interactive network graphs and data-driven visualizations in InteractOA's frontend" assertion.
- wikidataintegrator description "WikidataIntegrator is a Python library providing programmatic access to Wikidata, serving as middleware between InteractOA's Flask backend and the Wikidata SPARQL endpoint" assertion.
- component-network description "Allows users to visualize regulatory networks as interactive graphs" assertion.
- component-filters description "Allows users to narrow results by organism, interaction type, confidence, and other criteria" assertion.
- component-highlight description "Enables users to view evidence in source articles with key terms highlighted" assertion.
- component-table description "Provides tabular representation of interaction data for detailed exploration" assertion.
- query-step-1 description "Initial SPARQL query template with placeholders for user-specified parameters" assertion.
- query-step-2 description "Substitution of user-selected values into query template placeholders" assertion.
- query-step-3 description "Final assembly of complete, executable SPARQL query" assertion.
- query-step-4 description "Transmission of the complete SPARQL query to the Wikidata SPARQL endpoint for execution" assertion.
- query-step-5 description "Post-processing of query results to add external resource links and format data" assertion.
- query-step-6 description "Final presentation of processed results in the user interface (network visualization or table format)" assertion.
- benefit-community description "Wikimedia Foundation provides institutional backing and active community support for long-term maintenance" assertion.
- benefit-corpus description "Wikidata already contains millions of items that can be linked and integrated into InteractOA" assertion.
- benefit-interface description "Wikidata's intuitive web interface allows non-technical users to directly edit and contribute data" assertion.
- benefit-license description "CC0 public domain licensing ensures all data is freely available for any use without restrictions" assertion.
- benefit-sparql description "Public SPARQL endpoint enables complex querying and federation with other RDF sources" assertion.
- benefit-toolforge description "Wikimedia Toolforge provides free, sustainable hosting for Wikidata applications" assertion.
- fair-compliance description "InteractOA meets all four FAIR principles for research data management" assertion.
- sustain-backing description "Wikimedia Foundation provides institutional commitment to long-term maintenance of Wikidata infrastructure" assertion.
- sustain-curation description "Community-driven curation model with distributed volunteers prevents dependency on single maintainers" assertion.
- sustain-dumps description "Regular open data dumps enable independent preservation and archival by external organizations" assertion.
- sustain-versioning description "Complete version control history allows reverting to earlier states and tracking all changes" assertion.
- sustainability description "Four mechanisms ensure InteractOA's data remains available and maintained long-term" assertion.
- interop-federated description "SPARQL federation capability enables simultaneous queries across multiple RDF endpoints" assertion.
- interop-linked description "RDF/Linked Data format enables linking to external ontologies and data sources" assertion.
- interop-linking description "Universal entity identifiers enable linking diverse data types across domains" assertion.
- interoperability description "Three key interoperability features enable InteractOA to integrate with broader research ecosystem" assertion.
- Q14386308 description "Human pathogen and hospital-associated bacterial pathogen" assertion.
- competence_mechanism description "Mechanism allowing bacteria to take up extracellular DNA fragments from environment" assertion.
- iron_sequestration description "Host proteins sequester iron, essential cofactor for respiratory proteins" assertion.
- oxygen_depletion description "Immune cell oxygen consumption reduces oxygen availability to pathogen" assertion.
- respiratory_inhibition description "During S. aureus infection, multiple host factors inhibit bacterial respiration" assertion.
- ros_damage description "Reactive oxygen species produced by immune cells damage bacterial DNA, lipids, and proteins" assertion.
- enhanced_glycolysis description "S. aureus increases the rate of glycolysis to provide required energy for growth" assertion.
- increased_glucose_consumption description "Under fermentation, bacteria must consume more glucose to reach respiration-equivalent biomass" assertion.
- metabolic_shift_fermentation description "S. aureus redirects metabolism from respiration to fermentation when respiration is inhibited" assertion.
- reduced_atp_efficiency description "Fermentation produces ATP but is energetically less efficient than respiration" assertion.
- comk_induction description "ComK is strongly induced during infection and in response to ROS" assertion.
- comk_protein description "Regulatory protein that triggers expression of competence genes" assertion.
- infection_conditions description "Environmental condition within host during active infection" assertion.
- ros_stress description "Reactive oxygen species stress triggers ComK expression" assertion.
- dna_mutations description "ROS causes serious damage and mutations in ΔcomK mutant DNA" assertion.
- experimental_evidence description "ΔcomK competence-defective mutant shows impaired glycolysis and reduced survival" assertion.
- glycolysis_impairment description "ΔcomK mutant shows no increase in glycolysis under ROS exposure" assertion.
- reduced_survival description "ΔcomK mutant shows significantly reduced survival in both mouse and Galleria infection models" assertion.
- ros_accumulation description "ROS accumulates inside ΔcomK mutant due to impaired respiration" assertion.
- comk_mutant_reduced_survival_mouse description "S. aureus ΔcomK competence-defective mutant shows significantly reduced survival in mouse infection model" assertion.
- wildtype_enhanced_survival_galleria description "S. aureus with functional ComK shows enhanced survival in Galleria mellonella (wax moth) infection model" assertion.
- wildtype_enhanced_survival_mouse description "S. aureus with functional ComK shows enhanced survival in mouse infection model compared to ΔcomK mutant" assertion.
- comk_mutant_impaired_survival_galleria description "S. aureus ΔcomK competence-defective mutant shows strongly impaired survival in Galleria mellonella infection model" assertion.
- dna_nucleotide_precursor description "Extracellular DNA provides nucleotides for biosynthesis of new bacterial DNA" assertion.
- dna_nutritional_resource description "Extracellular DNA fragments serve as direct nutritional resource for S. aureus energy metabolism" assertion.
- dna_damage_repair_material description "Acquired DNA nucleotides provide substrates for repair of ROS-induced DNA damage" assertion.
- antibiotic_resistance_container description "Container grouping atomic assertions about antibiotic resistance mechanisms" assertion.
- genetic_variability_container description "Container grouping atomic assertions about genetic variability mechanisms" assertion.
- homologous_recombination description "Competent cells integrate acquired DNA through homologous recombination with chromosomal sequences" assertion.
- horizontal_gene_transfer description "Natural competence enables horizontal gene transfer (HGT) of adaptive genes between species and strains" assertion.
- metabolic_diversity_hgt description "Horizontal gene transfer enables bacteria to acquire genes for metabolizing diverse carbon sources and antibiotics" assertion.
- genetic_diversity_from_recombination description "Homologous recombination of acquired DNA generates genetic diversity within population" assertion.
- cross_species_adaptation description "HGT allows bacteria to acquire adaptive traits from distantly related species" assertion.
- expanded_resource_utilization description "Acquired metabolic genes expand environmental niches and resource utilization capacity" assertion.
- ca_mrsa_prevalence description "CA-MRSA strains became prevalent in community settings; natural competence facilitated rapid spread" assertion.
- ha_mrsa_emergence description "HA-MRSA strains emerged and became endemic in hospitals; natural competence contributed to rapid spread" assertion.
- resistance_determinant_hgt description "Natural competence enables horizontal transfer of antibiotic resistance genes (e.g., mecA) between MRSA strains" assertion.
- nosocomial_transmission description "Hospital-associated MRSA transmitted between patients via healthcare facility exposure" assertion.
- community_transmission description "CA-MRSA transmitted between individuals in community through skin-to-skin contact and contaminated surfaces" assertion.
- expanded_meca_distribution description "HGT spreads beta-lactamase resistance genes across MRSA lineages" assertion.
- alternative_function_hypothesis description "Com gene orthologs in non-competent species suggest alternative biological functions beyond DNA uptake" assertion.
- competence_conservation_container description "Container grouping atomic assertions about competence gene conservation" assertion.
- lactococcus_com_orthologs description "Orthologous com genes found in *Lactococcus lactis*; presence across divergent Gram-positive lineages confirms deep evolutionary origin" assertion.
- listeria_com_orthologs description "Orthologous com genes found in *Listeria monocytogenes*; presence indicates ancient evolutionary origin of competence" assertion.
- listeria_evolutionary_conservation description "Conservation of com genes across Gram-positive bacteria indicates functional importance" assertion.
- lactococcus_evolutionary_conservation description "Conservation across Gram-positive bacteria including lactic acid bacteria indicates ancient evolutionary origin" assertion.
- functional_divergence_in_orthologs description "Orthologous proteins may have evolved alternative cellular functions in non-competent bacteria" assertion.
- enhanced_glucose_availability description "Increased glucose transport provides additional energy substrate for fermentation during non-respiring growth" assertion.
- glucose_uptake_upregulation description "ComK upregulates genes encoding glucose-uptake transport machinery to enhance glycolytic substrate availability" assertion.
- dna_uptake_transport_system description "ComK upregulates genes encoding DNA-uptake transport machinery to enable competence" assertion.
- external_dna_acquisition description "Enhanced DNA transport machinery enables bacteria to acquire DNA from environment" assertion.